HL_6SKF_043

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GGCA(OMU)CGGC

Length

9 nucleotides

Bulged bases

6SKF|1|BA|G|450

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_043 not in the Motif Atlas

Homologous match to HL_4V9F_014

Geometric discrepancy: 0.2381

The information below is about HL_4V9F_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

6SKF|1|BA|G|449
6SKF|1|BA|G|450
6SKF|1|BA|C|451
6SKF|1|BA|A|452
6SKF|1|BA|OMU|453
6SKF|1|BA|C|454
6SKF|1|BA|G|455
6SKF|1|BA|G|456
6SKF|1|BA|C|457

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BO

50S ribosomal protein L15

Chain BP

50S ribosomal protein L15e

Chain Bl

50S ribosomal protein L44e