HL_6SKF_059

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

C(4AC)GAUUGG

Length

8 nucleotides

Bulged bases

6SKF|1|BA|U|1309

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_059 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2113

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6SKF|1|BA|C|1304
6SKF|1|BA|4AC|1305
6SKF|1|BA|G|1306
6SKF|1|BA|A|1307
6SKF|1|BA|U|1308
6SKF|1|BA|U|1309
6SKF|1|BA|G|1310
6SKF|1|BA|G|1311

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BO

50S ribosomal protein L15

Chain BR

50S ribosomal protein L18e