HL_6SKF_069

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CCGUG

Length

5 nucleotides

Bulged bases

6SKF|1|BA|C|1711, 6SKF|1|BA|G|1712

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_069 not in the Motif Atlas

Homologous match to HL_4V9F_041

Geometric discrepancy: 0.1044

The information below is about HL_4V9F_041

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6SKF|1|BA|C|1710
6SKF|1|BA|C|1711
6SKF|1|BA|G|1712
6SKF|1|BA|U|1713
6SKF|1|BA|G|1714

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain Bg

50S ribosomal protein L37Ae