HL_6SKF_070

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGACACUG

Length

8 nucleotides

Bulged bases

6SKF|1|BA|A|1761, 6SKF|1|BA|U|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_070 not in the Motif Atlas

Homologous match to HL_4V9F_042

Geometric discrepancy: 0.1208

The information below is about HL_4V9F_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

6SKF|1|BA|C|1757
6SKF|1|BA|G|1758
6SKF|1|BA|A|1759
6SKF|1|BA|C|1760
6SKF|1|BA|A|1761
6SKF|1|BA|C|1762
6SKF|1|BA|U|1763
6SKF|1|BA|G|1764

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BV

50S ribosomal protein L22

Chain Bh

50S ribosomal protein L37e

Chain Bi

50S ribosomal protein L39e