HL_6SKF_073

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UGUGUAA

Length

7 nucleotides

Bulged bases

6SKF|1|BA|U|1868

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_073 not in the Motif Atlas

Homologous match to HL_4V9F_045

Geometric discrepancy: 0.2673

The information below is about HL_4V9F_045

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6SKF|1|BA|U|1864
6SKF|1|BA|G|1865
6SKF|1|BA|U|1866
6SKF|1|BA|G|1867
6SKF|1|BA|U|1868
6SKF|1|BA|A|1869
6SKF|1|BA|A|1870

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BS

50S ribosomal protein L19e