HL_6SKF_076

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CC(4AC)GAAAG(OMG)G

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_076 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3904

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6SKF|1|BA|C|1932
6SKF|1|BA|C|1933
6SKF|1|BA|4AC|1934
6SKF|1|BA|G|1935
6SKF|1|BA|A|1936
6SKF|1|BA|A|1937
6SKF|1|BA|A|1938
6SKF|1|BA|G|1939
6SKF|1|BA|OMG|1940
6SKF|1|BA|G|1941

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain BP

50S ribosomal protein L15e