HL_6SKF_085

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GGUCUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_085 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.2439

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

6SKF|1|BA|G|2406
6SKF|1|BA|G|2407
6SKF|1|BA|U|2408
6SKF|1|BA|C|2409
6SKF|1|BA|U|2415
6SKF|1|BA|C|2416

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BF

50S ribosomal protein L5