HL_6SKF_086

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_086 not in the Motif Atlas

Homologous match to HL_4V9F_058

Geometric discrepancy: 0.2225

The information below is about HL_4V9F_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

6SKF|1|BA|U|2427
6SKF|1|BA|G|2428
6SKF|1|BA|C|2429
6SKF|1|BA|A|2430
6SKF|1|BA|A|2431
6SKF|1|BA|G|2432
6SKF|1|BA|G|2433
6SKF|1|BA|G|2434

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BJ

50S ribosomal protein L10e

Chain BU

50S ribosomal protein L21e