HL_6SKF_089

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CCCCGGUGG

Length

9 nucleotides

Bulged bases

6SKF|1|BA|C|2512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_089 not in the Motif Atlas

Homologous match to HL_4V9F_061

Geometric discrepancy: 0.2307

The information below is about HL_4V9F_061

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

6SKF|1|BA|C|2511
6SKF|1|BA|C|2512
6SKF|1|BA|C|2513
6SKF|1|BA|C|2514
6SKF|1|BA|G|2515
6SKF|1|BA|G|2516
6SKF|1|BA|U|2517
6SKF|1|BA|G|2518
6SKF|1|BA|G|2519

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BO

50S ribosomal protein L15

Chain BP

50S ribosomal protein L15e

Chain Bl

50S ribosomal protein L44e