HL_6SKF_098

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_098 not in the Motif Atlas

Homologous match to HL_4V9F_070

Geometric discrepancy: 0.1845

The information below is about HL_4V9F_070

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6SKF|1|BA|G|2986
6SKF|1|BA|G|2987
6SKF|1|BA|A|2988
6SKF|1|BA|A|2989
6SKF|1|BA|A|2990
6SKF|1|BA|C|2991

Current chains

Chain BA

23S rRNA

Nearby chains

Chain Ak

30S ribosomal protein S8e

Chain BS

50S ribosomal protein L19e