HL_6SKF_108

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

(4AC)GUG(A2M)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_108 not in the Motif Atlas

Homologous match to HL_4V9F_015

Geometric discrepancy: 0.091

The information below is about HL_4V9F_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6SKF|1|BA|4AC|501
6SKF|1|BA|G|502
6SKF|1|BA|U|503
6SKF|1|BA|G|504
6SKF|1|BA|A2M|505
6SKF|1|BA|G|506

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain Bh

50S ribosomal protein L37e

Chain Bi

50S ribosomal protein L39e