HL_6SKF_111

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

(OMU)GAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_111 not in the Motif Atlas

Homologous match to HL_4V9F_022

Geometric discrepancy: 0.5437

The information below is about HL_4V9F_022

Detailed Annotation

GNRA

Broad Annotation

GNRA

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

6SKF|1|BA|OMU|768
6SKF|1|BA|G|769
6SKF|1|BA|A|770
6SKF|1|BA|A|771
6SKF|1|BA|A|772
6SKF|1|BA|G|773

Current chains

Chain BA

23S rRNA

Nearby chains

Chain Bl

50S ribosomal protein L44e