3D structure

PDB id
6SKG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain
Experimental method
ELECTRON MICROSCOPY
Resolution
2.65 Å

Loop

Sequence
GGGCGAC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6SKG_037 not in the Motif Atlas
Homologous match to HL_4V9F_008
Geometric discrepancy: 0.124
The information below is about HL_4V9F_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_37369.2
Basepair signature
cWW-tSH-F-F-F
Number of instances in this motif group
9

Unit IDs

6SKG|1|BA|G|237
6SKG|1|BA|G|238
6SKG|1|BA|G|239
6SKG|1|BA|C|240
6SKG|1|BA|G|241
6SKG|1|BA|A|242
6SKG|1|BA|C|243

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BO
50S ribosomal protein L15
Chain Bl
50S ribosomal protein L44e

Coloring options:


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