HL_6SKG_038

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_038 not in the Motif Atlas

Homologous match to HL_4V9F_009

Geometric discrepancy: 0.1966

The information below is about HL_4V9F_009

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6SKG|1|BA|C|277
6SKG|1|BA|G|278
6SKG|1|BA|A|279
6SKG|1|BA|A|280
6SKG|1|BA|A|281
6SKG|1|BA|G|282

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Bo

Nucleic acid-binding protein, containing C2H2 zinc-finger