Motif HL_37824.7 Version HL_37824.7 of this group appears in releases 3.96 to 3.96

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6	1-6	2-4	2-5	2-6
1	HL_1U9S_001	1U9S	0.6497	1	GNRA	A	RIBONUCLEASE P	G	84	U	85	A	86	A	87	C	88	C	90	cWW
2	HL_8P9A_232	8P9A	0.4617	1	GNRA	AR	LSU rRNA	C	1023	G	1024	A	1025	A	1026	A	1027	G	1029	ncWW			ncSW
3	HL_5VSU_001	5VSU	0.5582	0	GNRA variation	I	U6 snRNA	U	70	G	71	C	72	A	73	U	74	A	75	cWW
4	HL_4V9F_022	4V9F	0.4955	0	GNRA	0	LSU rRNA	U	733	U	734	C	735	A	736	A	737	G	738	cWW
5	HL_8DP3_003	8DP3	0.4282	0	GNRA	R	RNA (90-MER)	U	62	C	63	A	64	C	65	C	66	G	67	cWW
6	HL_6ASO_001	6ASO	0.3179	1	GNRA	I	U6 snRNA	U	70	G	71	C	72	U	74	A	75	A	76	ncWW		tSH
7	HL_4WF9_071	4WF9	0.4023	0	GNRA	X	LSU rRNA	U	1762	U	1763	A	1764	A	1765	C	1766	G	1767	ncWW	ntsS
8	HL_9DFE_033	9DFE	0.3904	0	GNRA	1A	LSU rRNA	C	1363	G	1364	A	1365	A	1366	A	1367	G	1368	cWW
9	HL_5J7L_167	5J7L	0.4157	0	GNRA	DA	LSU rRNA	C	1363	G	1364	A	1365	A	1366	A	1367	G	1368	cWW
10	HL_4WF9_034	4WF9	0.5133	0	GNRA	X	LSU rRNA	C	1400	G	1401	A	1402	C	1403	A	1404	G	1405	cWW
11	HL_7A0S_034	7A0S	0.5414	0	GNRA variation	X	LSU rRNA	C	1376	G	1377	A	1378	A	1379	C	1380	G	1381	cWW
12	HL_8CRE_225	8CRE	0.4507	0	GNRA variation (H)	CM	SSU rRNA	G	1765	U	1766	G	1767	A	1768	A	1769	C	1770	cWW
13	HL_8P9A_225	8P9A	0.4825	0	GNRA variation	sR	SSU rRNA	G	1778	U	1779	G	1780	A	1781	A	1782	C	1783	cWW
14	HL_4LFB_032	4LFB	0.4529	0	GNRA	A	SSU rRNA	C	1515	G	1516	G	1517	MA6	1518	MA6	1519	G	1520	cWW
15	HL_5J7L_031	5J7L	0.4499	0	GNRA	AA	SSU rRNA	G	1515	2MG	1516	G	1517	MA6	1518	MA6	1519	C	1520	cWW
16	HL_1L9A_001	1L9A	0.4632	0	GNRA variation	B	signal recognition particle RNA S domain	G	146	G	147	G	148	A	149	G	150	C	151	cWW
17	HL_1JID_001	1JID	0.4121	0	GNRA variation	B	HELIX 6 OF HUMAN SRP RNA	G	146	G	147	G	148	A	149	G	150	C	151	cWW
18	HL_1MFQ_001	1MFQ	0.4342	0	GNRA variation	A	SRP RNA	G	146	G	147	G	148	A	149	G	150	C	151	cWW
19	HL_3KTW_001	3KTW	0.5356	0	GNRA	C	SRP RNA	U	163	G	164	G	165	A	166	G	167	G	168	cWW
20	HL_4WF9_031	4WF9	0.3851	0	GNRA	X	LSU rRNA	C	1260	G	1261	U	1262	A	1263	A	1264	G	1265	cWW
21	HL_7A0S_031	7A0S	0.4549	0	GNRA	X	LSU rRNA	C	1235	G	1236	G	1237	A	1238	A	1239	G	1240	cWW
22	HL_5J7L_164	5J7L	0.3532	0	GNRA	DA	LSU rRNA	U	1222	G	1223	U	1224	G	1225	A	1226	G	1227	cWW
23	HL_3AM1_002	3AM1	0.4075	0	GNRA variation	B	ASL-truncated tRNA	C	32	U	33	U	34	C	35	G	36	G	37	cWW
24	HL_8CRE_199	8CRE	0.5282	0	GNRA variation (H)	CM	SSU rRNA	U	366	A	367	A	368	G	369	G	370	G	371	cWW
25	HL_5J7L_205	5J7L	0.4454	0	GNRA variation	AA	SSU rRNA	C	522	A	523	G	524	C	525	C	526	G7M	527	cWW
26	HL_4LFB_033	4LFB	0.4726	0	GNRA variation	A	SSU rRNA	C	522	A	523	G	524	C	525	C	526	7MG	527	cWW
27	HL_7U4A_001	7U4A	0.4653	0	GNRA variation	A	RNA (70-MER)	C	13	G	14	A	15	A	16	A	17	G	18	cWW
28	HL_8P9A_145	8P9A	0.3811	0	GNRA variation	AR	LSU rRNA	G	1544	A	1545	A	1546	G	1547	C	1548	U	1549	cWW
29	HL_8CRE_032	8CRE	0.3731	0	GNRA variation (H)	1	LSU rRNA	G	1540	A	1541	A	1542	G	1543	C	1544	U	1545	cWW
30	HL_1U6B_004	1U6B	0.4150	0	GNRA variation	B	197-MER	C	153	A	154	A	155	A	156	C	157	G	158	cWW
31	HL_6LAX_002	6LAX	0.3068	0	GNRA	A	RNA (55-MER)	U	42	G	43	A	44	A	45	A	46	A	47	cWW		ntsS
32	HL_5VW1_003	5VW1	0.2251	0	GNRA with GA tSW pair	C	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW		ntsS
33	HL_9L6Y_001	9L6Y	0.2646	0		B	CS2 RNA	C	13	G	14	A	15	A	16	A	17	G	18	cWW		ntsS
34	HL_3AGV_001	3AGV	0.3264	0		U	RNA (24-mer)	CFZ	11	G	12	A	13	A	14	A	15	G	16	cWW
35	HL_4QK9_001	4QK9	0.2782	0	GNRA variation	A	C-di-AMP riboswitch	C	14	U	15	G	16	A	17	A	18	G	19	cWW
36	HL_7QQX_001	7QQX	0.2607	0	GNRA	A	FANCF sgRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW
37	HL_1M5K_003	1M5K	0.2853	0	GNRA	B	RNA HAIRPIN RIBOZYME	G	74	G	75	A	76	A	77	A	78	C	79	cWW		ntSH
38	HL_8CRE_222	8CRE	0.1973	0	GNRA (H)	CM	SSU rRNA	C	1488	G	1489	A	1490	G	1491	A	1492	G	1493	cWW		ntSH
39	HL_8P9A_221	8P9A	0.2591	0	GNRA	sR	SSU rRNA	C	1501	G	1502	A	1503	G	1504	A	1505	G	1506	cWW		ntSH
40	HL_6YMC_001	6YMC	0.2194	0	GNRA	A	RNA (26-MER)	G	11	G	12	A	13	A	14	A	15	C	16	cWW		ntSH
41	HL_4C7O_001	4C7O	0.2717	0	GNRA	E	SRP RNA	C	19	G	20	G	21	A	22	A	23	G	24	cWW
42	HL_5J7L_190	5J7L	0.2246	0	GNRA	DA	LSU rRNA	U	2356	G	2357	A	2358	C	2359	G	2360	G	2361	cWW
43	HL_4OQU_004	4OQU	0.2312	0	GNRA	A	SAM-I/IV riboswitch	C	76	G	77	A	78	G	79	A	80	G	81	cWW
44	HL_6SVS_001	6SVS	0.2418	0	GNRA	A	RNA (79-mer)	C	26	G	27	A	28	A	29	A	30	G	31	cWW
45	HL_1G1X_003	1G1X	0.2489	0	GNRA	E	16S RIBOSOMAL RNA	C	726	G	727	A	728	A	729	G	730	G	731	cWW
46	HL_1G1X_005	1G1X	0.2419	0	GNRA	J	16S RIBOSOMAL RNA	C	726	G	727	A	728	A	729	G	730	G	731	cWW
47	HL_8CRE_211	8CRE	0.2402	0	GNRA (H)	CM	SSU rRNA	C	922	G	923	A	924	A	925	A	926	G	927	cWW
48	HL_8P9A_210	8P9A	0.2258	0	GNRA	sR	SSU rRNA	C	937	G	938	A	939	A	940	A	941	G	942	cWW
49	HL_5J7L_016	5J7L	0.2332	0	GNRA	AA	SSU rRNA	C	726	G	727	A	728	A	729	G	730	G	731	cWW
50	HL_4LFB_016	4LFB	0.2421	0	GNRA	A	SSU rRNA	C	726	G	727	A	728	A	729	G	730	G	731	cWW
51	HL_6M0X_001	6M0X	0.1680	0	GNRA	B	RNA (71-MER)	C	32	G	33	A	34	A	35	A	36	G	37	cWW
52	HL_6MJ0_008	6MJ0	0.2514	0	GNRA with GA tSW pair	B	tRNA-like 3' UTR element	C	49	G	50	A	51	A	52	A	53	G	54	cWW
53	HL_6UFH_004	6UFH	0.2468	0	GNRA	A	RNA (167-MER)	C	106	G	107	A	108	A	109	A	110	G	111	cWW
54	HL_8P9A_147	8P9A	0.3220	0	GNRA	AR	LSU rRNA	G	1634	G	1635	U	1636	A	1637	A	1638	C	1639	cWW
55	HL_8CRE_035	8CRE	0.3471	0	GNRA (H)	1	LSU rRNA	G	1630	G	1631	C	1632	A	1633	A	1634	C	1635	cWW
56	HL_8P9A_142	8P9A	0.3057	0	GNRA	AR	LSU rRNA	C	1403	G	1404	U	1405	A	1406	A	1407	G	1408	cWW
57	HL_8CRE_029	8CRE	0.3164	0	GNRA (H)	1	LSU rRNA	U	1399	G	1400	U	1401	A	1402	A	1403	A	1404	cWW
58	HL_4V9F_033	4V9F	0.3383	0	GNRA	0	LSU rRNA	C	1326	G	1327	A	1328	G	1329	A	1330	G	1331	cWW
59	HL_2BTE_003	2BTE	0.3248	0	GNRA	B	tRNA	C	46	G	47	C	47\|\|\|A	A	47\|\|\|B	A	47\|\|\|C	G	47\|\|\|D	cWW
60	HL_4WF9_059	4WF9	0.2957	0	GNRA	X	LSU rRNA	C	2621	G	2622	U	2623	G	2624	A	2625	G	2626	cWW
61	HL_7MRL_002	7MRL	0.2270	0	GNRA	A	tRNA	G	34	G	35	A	36	A	37	A	38	C	39	cWW
62	HL_4WF9_065	4WF9	0.2689	0	GNRA	X	LSU rRNA	G	2876	G	2877	U	2878	G	2879	A	2880	C	2881	cWW
63	HL_8P9A_217	8P9A	0.2826	0	GNRA	sR	SSU rRNA	A	1296	G	1297	U	1298	G	1299	A	1300	U	1301	cWW
64	HL_5J7L_027	5J7L	0.2991	0	GNRA	AA	SSU rRNA	C	1265	G	1266	C	1267	G	1268	A	1269	G	1270	cWW
65	HL_5J7L_023	5J7L	0.2876	0	GNRA	AA	SSU rRNA	U	1076	G	1077	U	1078	G	1079	A	1080	A	1081	cWW
66	HL_4LFB_024	4LFB	0.2834	0	GNRA	A	SSU rRNA	C	1076	G	1077	U	1078	G	1079	A	1080	G	1081	cWW
67	HL_4V9F_017	4V9F	0.2551	0	GNRA	0	LSU rRNA	C	576	G	577	C	578	G	579	A	580	G	581	cWW
68	HL_4YAZ_003	4YAZ	0.2444	0	GNRA	R	Cyclic di-GMP-I riboswitch	C	25	G	26	C	27	G	28	A	29	G	30	cWW
69	HL_4WFL_003	4WFL	0.2196	0	GNRA	A	LSRP RNA	G	81	G	82	U	83	A	84	A	85	C	86	cWW
70	HL_4V9F_015	4V9F	0.2309	0	GNRA	0	LSU rRNA	U	468	G	469	U	470	G	471	A	472	A	473	cWW
71	HL_8P9A_122	8P9A	0.2319	0	GNRA	AR	LSU rRNA	A	357	G	358	U	359	G	360	A	361	U	362	cWW
72	HL_8CRE_010	8CRE	0.2346	0	GNRA (H)	1	LSU rRNA	A	357	G	358	U	359	G	360	A	361	U	362	cWW
73	HL_8P9A_175	8P9A	0.2222	0	GNRA	AR	LSU rRNA	C	2963	G	2964	U	2965	G	2966	A	2967	G	2968	cWW
74	HL_8CRE_218	8CRE	0.2392	0	GNRA (H)	CM	SSU rRNA	A	1281	G	1282	U	1283	G	1284	A	1285	U	1286	cWW
75	HL_5J7L_196	5J7L	0.2215	0	GNRA	DA	LSU rRNA	C	2594	G	2595	U	2596	G	2597	A	2598	G	2599	cWW
76	HL_9DFE_066	9DFE	0.2232	0	GNRA	1A	LSU rRNA	C	2856	G	2857	C	2858	G	2859	A	2860	G	2861	cWW
77	HL_7KKV_001	7KKV	0.2577	0	GNRA	B	OLE* RNA	G	500	G	501	U	502	G	503	A	504	C	505	cWW
78	HL_4V9F_065	4V9F	0.2412	0	GNRA	0	LSU rRNA	C	2629	G	2630	U	2631	G	2632	A	2633	G	2634	cWW
79	HL_3IGI_003	3IGI	0.2434	0	GNRA	A	Group IIC intron	G	89	G	90	C	91	G	92	A	93	C	94	cWW
80	HL_2Z75_004	2Z75	0.2682	0	GNRA	B	glmS ribozyme	G	113	G	114	C	115	G	116	A	117	C	118	cWW
81	HL_7A0S_015	7A0S	0.2305	0	GNRA	X	LSU rRNA	C	473	G	474	U	475	G	476	A	477	G	478	cWW
82	HL_8CRE_063	8CRE	0.2152	0	GNRA (H)	1	LSU rRNA	C	2935	G	2936	U	2937	G	2938	A	2939	G	2940	cWW
83	HL_4WF9_015	4WF9	0.2139	0	GNRA	X	LSU rRNA	C	508	G	509	U	510	G	511	A	512	G	513	cWW
84	HL_3W3S_003	3W3S	0.2714	0	GNRA	B	Selenocysteine transfer RNA	C	47\|\|\|F	G	47\|\|\|G	C	47\|\|\|H	A	47\|\|\|I	A	47\|\|\|J	G	47\|\|\|K	cWW
85	HL_5U3G_002	5U3G	0.2139	0	GNRA	B	Guanidine-I riboswitch	C	47	G	48	A	49	A	50	A	51	G	52	cWW		ntSH
86	HL_7A0S_062	7A0S	0.2443	0	GNRA	X	LSU rRNA	C	2573	G	2574	U	2575	G	2576	A	2577	G	2578	cWW
87	HL_9DFE_061	9DFE	0.2547	0	GNRA	1A	LSU rRNA	C	2594	G	2595	U	2596	G	2597	A	2598	G	2599	cWW		ntSH
88	HL_9DFE_030	9DFE	0.2360	0	GNRA	1A	LSU rRNA	C	1222	G	1223	C	1224	G	1225	A	1226	G	1227	cWW
89	HL_5J7L_147	5J7L	0.2053	0	GNRA	DA	LSU rRNA	C	462	G	463	U	464	G	465	A	466	G	467	cWW
90	HL_9DFE_014	9DFE	0.1758	0	GNRA	1A	LSU rRNA	C	462	G	463	U	464	G	465	A	466	G	467	cWW
91	HL_4WF9_020	4WF9	0.2155	0	GNRA	X	LSU rRNA	C	674	G	675	A	676	A	677	A	678	G	679	cWW
92	HL_7A0S_068	7A0S	0.2066	0	GNRA	X	LSU rRNA	A	2831	G	2832	C	2833	A	2834	A	2835	U	2836	cWW		ntSH
93	HL_4LFB_028	4LFB	0.2202	0	GNRA	A	SSU rRNA	G	1265	G	1266	C	1267	A	1268	A	1269	C	1270	cWW
94	HL_2NZ4_008	2NZ4	0.1988	0		Q	GlmS ribozyme	G	108	G	109	U	110	G	111	A	112	C	113	cWW
95	HL_5J7L_202	5J7L	0.1941	0	GNRA	DA	LSU rRNA	A	2856	G	2857	C	2858	G	2859	A	2860	U	2861	cWW
96	HL_1U9S_004	1U9S	0.1698	0	GNRA	A	RIBONUCLEASE P	G	204	G	205	C	206	A	207	A	208	C	209	cWW		ntSH
97	HL_9DFE_018	9DFE	0.1674	0	GNRA	1A	LSU rRNA	G	629	G	630	A	631	A	632	A	633	C	634	cWW
98	HL_6DME_001	6DME	0.2060	0	GNRA	A	ppGpp Riboswitch	C	25	G	26	A	27	G	28	A	29	G	30	cWW
99	HL_5J7L_191	5J7L	0.1865	0	GNRA	DA	LSU rRNA	C	2374	G	2375	A	2376	A	2377	A	2378	G	2379	cWW
100	HL_4QK9_002	4QK9	0.2049	0	GNRA	A	C-di-AMP riboswitch	C	56	G	57	U	58	A	59	A	60	G	61	cWW
101	HL_6U8D_002	6U8D	0.1505	0	GNRA	A	JIIIabc RNA (68-MER)	G	180	G	198	A	199	A	200	A	201	C	219	cWW
102	HL_6JQ5_002	6JQ5	0.1743	0	GNRA	A	RNA (82-MER)	C	45	G	46	A	47	A	48	A	49	G	50	cWW
103	HL_7MKY_002	7MKY	0.1667	0	GNRA	A	RNA (66-MER)	G	40	G	41	A	42	A	43	A	44	C	45	cWW
104	HL_2OIU_003	2OIU	0.1853	0	GNRA	P	L1 Ribozyme RNA Ligase	C	59	G	60	A	61	A	62	A	63	G	64	cWW
105	HL_3NPQ_001	3NPQ	0.2357	0	GNRA	A	S-ADENOSYLHOMOCYSTEINE RIBOSWITCH	C	20	G	21	A	22	G	23	A	24	G	25	cWW
106	HL_4Y1M_004	4Y1M	0.1826	0	GNRA	B	E. coli yybP-ykoY riboswitch	A	81	G	82	A	83	A	84	A	85	U	86	cWW		ntSH
107	HL_359D_001	359D	0.1556	0	GNRA	B	RNA HAMMERHEAD RIBOZYME	C	154	G	31\|\|\|L	U	32\|\|\|L	A	33\|\|\|L	A	34\|\|\|L	G	164	cWW
108	HL_9DFE_069	9DFE	0.2584	0	GNRA	1B	5S rRNA	G	86	G	87	C	88	G	89	A	90	C	91	cWW
109	HL_7A0S_070	7A0S	0.2306	0	GNRA	Y	5S rRNA	C	88	G	89	C	90	A	91	G	92	G	93	cWW
110	HL_4LVW_002	4LVW	0.2619	0	GNRA	A	THF riboswitch	C	58	G	59	A	60	G	61	A	62	G	63	cWW
111	HL_3NKB_002	3NKB	0.2469	0	GNRA	B	The hepatitis delta virus ribozyme	C	49	G	50	A	51	A	52	A	53	G	54	cWW
112	HL_6CB3_006	6CB3	0.2373	0	GNRA	B	RNA (99-MER)	C	76	G	77	A	78	A	79	A	80	G	81	cWW
113	HL_7JNH_001	7JNH	0.2478	0	GNRA	B	Core double ENE RNA (Xtal construct) from Oryza sativa transposon	C	43	G	44	A	45	A	46	A	47	G	48	cWW
114	HL_8P9A_128	8P9A	0.2139	0	GNRA	AR	LSU rRNA	U	707	G	708	A	709	A	710	A	711	G	712	cWW
115	HL_8CRE_015	8CRE	0.2158	0	GNRA (H)	1	LSU rRNA	U	705	G	706	A	707	A	708	A	709	G	710	cWW
116	HL_8CRE_058	8CRE	0.1846	0	GNRA (H)	1	LSU rRNA	U	2716	G	2717	A	2718	A	2719	A	2720	G	2721	cWW
117	HL_8P9A_170	8P9A	0.2239	0	GNRA	AR	LSU rRNA	U	2744	G	2745	A	2746	A	2747	A	2748	G	2749	cWW
118	HL_9DFE_045	9DFE	0.2116	0	GNRA	1A	LSU rRNA	U	1864	G	1865	C	1866	A	1876	A	1877	G	1878	cWW
119	HL_8P9A_125	8P9A	0.1613	0	GNRA	AR	LSU rRNA	C	599	G	600	U	601	A	602	A	603	G	604	cWW
120	HL_7A0S_020	7A0S	0.2102	0	GNRA	X	LSU rRNA	C	640	G	641	A	642	A	643	A	644	G	645	cWW
121	HL_7A0S_057	7A0S	0.1844	0	GNRA	X	LSU rRNA	G	2353	G	2354	A	2355	A	2356	A	2357	C	2358	cWW
122	HL_4WF9_054	4WF9	0.2055	0	GNRA	X	LSU rRNA	C	2401	G	2402	A	2403	A	2404	A	2405	G	2406	cWW
123	HL_5DDO_003	5DDO	0.2130	0	GNRA with GA tSW pair	B	L-glutamine riboswitch (58-MER)	G	11	G	12	A	13	A	14	A	15	C	16	cWW
124	HL_1UN6_004	1UN6	0.1533	0	GNRA	F	5S RIBOSOMAL RNA	G	82	G	83	A	84	A	85	A	86	C	94	cWW		ntSH
125	HL_4OQU_001	4OQU	0.1797	0	GNRA	A	SAM-I/IV riboswitch	G	13	G	14	A	15	G	16	A	17	C	18	ncWW
126	HL_6CB3_005	6CB3	0.1915	0	GNRA	B	RNA (99-MER)	G	50	G	51	A	52	A	53	A	54	C	55	cWW
127	HL_3E5C_002	3E5C	0.2004	0	GNRA	A	SMK box (SAM-III) Riboswitch	C	41	G	42	A	43	A	44	A	45	G	46	cWW
128	HL_4PQV_001	4PQV	0.2435	0	GNRA	A	Flavivirus 3' UTR stem loop IV	C	13	G	14	A	15	A	16	A	17	G	18	cWW
129	HL_8VU0_002	8VU0	0.1947	0	GNRA	C	tRNA	C	33	G	34	A	35	A	36	A	37	G	38	cWW
130	HL_6CU1_002	6CU1	0.2020	0	GNRA	A	Y RNA-like	C	42	G	43	A	44	A	45	A	46	G	47	cWW
131	HL_6UFG_004	6UFG	0.1461	0	GNRA	A	RNA (166-MER)	C	105	G	106	A	107	A	108	A	109	G	110	cWW		ntSH
132	HL_3SUX_002	3SUX	0.1506	0	GNRA	X	THF riboswitch	C	65	G	66	A	67	A	68	A	69	G	70	cWW
133	HL_8CRE_046	8CRE	0.1720	0	GNRA (H)	1	LSU rRNA	A	2198	G	2199	A	2200	A	2201	A	2202	U	2203	cWW
134	HL_8P9A_159	8P9A	0.1942	0	GNRA	AR	LSU rRNA	A	2220	G	2221	A	2222	A	2223	A	2224	U	2225	cWW
135	HL_8CRE_214	8CRE	0.1679	0	GNRA (H)	CM	SSU rRNA	A	1069	G	1070	A	1071	A	1072	A	1073	U	1074	cWW
136	HL_8P9A_213	8P9A	0.1524	0	GNRA	sR	SSU rRNA	A	1084	G	1085	A	1086	A	1087	A	1088	U	1089	cWW
137	HL_4V9F_060	4V9F	0.1714	0	GNRA	0	LSU rRNA	C	2411	G	2412	A	2413	A	2414	A	2415	G	2416	cWW
138	HL_2ZZM_003	2ZZM	0.1552	0	GNRA	B	RNA (84-MER)	C	47	G	47\|\|\|A	U	47\|\|\|B	A	47\|\|\|C	G	47\|\|\|D	G	47\|\|\|E	cWW
139	HL_5B2T_001	5B2T	0.1284	0	GNRA	A	tracrRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW
140	HL_6N2V_001	6N2V	0.1479	0	GNRA	A	X. oryzae Mn riboswitch optimized construct	G	24	G	25	A	26	A	27	A	28	C	29	cWW
141	HL_5J7L_152	5J7L	0.1488	0	GNRA	DA	LSU rRNA	G	629	G	630	A	631	A	632	A	633	C	634	cWW
142	HL_5F9F_003	5F9F	0.1556	0	GNRA	F	RNA (24-mer)	A	10	G	11	U	12	G	13	A	14	U	15	cWW
143	HL_6UFH_002	6UFH	0.1210	0	GNRA	A	RNA (167-MER)	G	45	G	46	A	47	A	48	A	49	C	50	cWW		ntSH
144	HL_6JOO_001	6JOO	0.1049	0	GNRA	B	Guide RNA	G	32	G	33	A	34	A	35	A	36	C	37	cWW		ntSH
145	HL_8CRE_011	8CRE	0.1043	0	GNRA (H)	1	LSU rRNA	U	382	G	383	A	384	A	385	A	386	A	387	cWW		ntSH
146	HL_7A0S_047	7A0S	0.1999	0	GNRA	X	LSU rRNA	U	1856	G	1857	C	1858	A	1859	A	1860	G	1861	cWW
147	HL_4WF9_060	4WF9	0.1889	0	GNRA	X	LSU rRNA	C	2685	G	2686	A	2687	G	2688	A	2689	G	2690	cWW		ntSH
148	HL_5FQ5_003	5FQ5	0.2318	0	GNRA	A	SGRNA	U	72	G	73	A	74	A	75	A	76	A	77	ncWW		ntSH
149	HL_7QR0_003	7QR0	0.2040	0	GNRA	A	TRAC sgRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW		ntSH
150	HL_8XPP_001	8XPP	0.1723	0	GNRA	B	RNA (35-MER)	U	588	G	589	A	590	A	591	A	592	G	593	cWW		ntSH
151	HL_6AZ4_001	6AZ4	0.2118	0	GNRA	A	RNA (32-MER)	U	20	G	21	A	22	A	23	A	24	G	25	cWW		ntSH
152	HL_4V9F_070	4V9F	0.1796	0	GNRA	0	LSU rRNA	G	2876	G	2877	U	2878	A	2879	A	2880	C	2881	cWW		ntSH
153	HL_6CB3_004	6CB3	0.1815	0	GNRA	B	RNA (99-MER)	G	20	G	21	A	22	A	23	A	24	C	25	cWW		ntSH
154	HL_8HZL_002	8HZL	0.1029	0	GNRA	B	RNA (84-MER)	C	49	G	50	A	51	A	52	A	53	G	54	cWW		ntSH
155	HL_3NVI_002	3NVI	0.1460	0	GNRA	F	RNA (24-mer)	C	9	G	10	A	11	A	12	A	13	G	14	cWW		ntSH
156	HL_4NLF_001	4NLF	0.1563	0	GNRA	A	23S ribosomal RNA Sarcin Ricin Loop	C	2658	G	2659	A	2660	G	2661	A	2662	G	2663	cWW		ntSH
157	HL_8CRE_018	8CRE	0.1544	0	GNRA (H)	1	LSU rRNA	G	840	G	841	A	842	A	843	A	844	C	845	cWW		ntSH
158	HL_7ENI_001	7ENI	0.1585	0	GNRA	B	sgRNA (74-MER)	G	34	G	35	A	36	A	37	A	38	C	39	cWW		ntSH
159	HL_5J7L_003	5J7L	0.1628	0	GNRA	AA	SSU rRNA	G	158	G	159	A	160	A	161	A	162	C	163	cWW		ntSH
160	HL_4LFB_003	4LFB	0.2285	0	GNRA	A	SSU rRNA	G	158	G	159	A	160	A	161	A	162	C	163	cWW		ntSH
161	HL_4LFB_020	4LFB	0.1657	0	GNRA	A	SSU rRNA	C	897	G	898	C	899	A	900	A	901	G	902	cWW		ntSH
162	HL_5J7L_020	5J7L	0.1849	0	GNRA	AA	SSU rRNA	C	897	G	898	C	899	A	900	A	901	G	902	cWW		ntSH
163	HL_4V9F_048	4V9F	0.1861	0	GNRA	0	LSU rRNA	C	1862	G	1863	C	1864	A	1865	A	1866	G	1867	cWW		ntSH
164	HL_5M0J_001	5M0J	0.2019	0	GNRA	E	ASH1 E3 (28 nt-loop)	C	12	G	13	A	14	A	15	A	16	G	17	cWW		ntSH
165	HL_5M0J_002	5M0J	0.1625	0	GNRA	F	ASH1 E3 (28 nt-loop)	C	12	G	13	A	14	A	15	A	16	G	17	cWW		ntSH
166	HL_5M0I_001	5M0I	0.1564	0	GNRA	E	ASH1-E3 element, RNA (28-MER)	C	12	G	13	A	14	A	15	A	16	G	17	cWW		ntSH
167	HL_3LQX_001	3LQX	0.1277	0	GNRA	B	SRP RNA	C	153	G	154	A	155	A	156	A	157	G	158	cWW		tSH
168	HL_6N2V_003	6N2V	0.1219	0	GNRA	A	X. oryzae Mn riboswitch optimized construct	C	76	G	77	A	78	A	79	A	80	G	81	cWW		ntSH
169	HL_5M0I_002	5M0I	0.1305	0	GNRA	F	ASH1-E3 element, RNA (28-MER)	C	12	G	13	A	14	A	15	A	16	G	17	cWW		ntSH
170	HL_1HMH_003	1HMH	0.1234	0	GNRA	E	HAMMERHEAD RIBOZYME-RNA STRAND	C	104	G	21\|\|\|L	A	22\|\|\|L	A	23\|\|\|L	A	24\|\|\|L	G	114	cWW		ntSH
171	HL_8CRE_215	8CRE	0.1365	0	GNRA (H)	CM	SSU rRNA	C	1106	G	1107	C	1108	A	1109	A	1110	G	1111	cWW		ntSH
172	HL_8P9A_214	8P9A	0.1541	0	GNRA	sR	SSU rRNA	C	1121	G	1122	C	1123	A	1124	A	1125	G	1126	cWW		ntSH
173	HL_7ELQ_001	7ELQ	0.1546	0	GNRA	A	NMT1 RNA	C	22	G	23	A	24	A	25	A	26	G	27	cWW		ntSH
174	HL_4V9F_040	4V9F	0.2094	0	GNRA	0	LSU rRNA	G	1628	G	1629	A	1630	A	1631	A	1632	C	1633	cWW		ntSH
175	HL_6JDV_002	6JDV	0.1833	0	GNRA	B	sgRNA	U	86	G	87	A	88	A	89	A	90	A	91	cWW		tSH
176	HL_1MFQ_002	1MFQ	0.1750	0	GNRA	A	SRP RNA	G	197	G	198	A	199	A	200	A	201	C	202	cWW		tSH
177	HL_8KAJ_002	8KAJ	0.1576	0		I	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW
178	HL_7QR0_001	7QR0	0.1743	0	GNRA	A	TRAC sgRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW		ntSH
179	HL_7QQP_001	7QQP	0.1597	0	GNRA	A	AAVS1 sgRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW		ntSH
180	HL_7ZO1_001	7ZO1	0.1472	0	GNRA	A	CD34 sgRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW
181	HL_4AOB_002	4AOB	0.1600	0	GNRA	A	SAM-I riboswitch	A	49	A	50	A	51	A	52	A	53	U	54	cWW		tSH
182	HL_9DFE_056	9DFE	0.1678	0	GNRA	1A	LSU rRNA	C	2374	G	2375	A	2376	A	2377	A	2378	G	2379	cWW		ntSH
183	HL_4V9F_023	4V9F	0.1314	0	GNRA	0	LSU rRNA	C	804	G	805	A	806	A	807	A	808	G	809	cWW		ntSH
184	HL_1Q96_001	1Q96	0.1285	0	GNRA	A	sarcin/ricin 28S rRNA	U	13	G	14	A	15	G	16	A	17	A	18	cWW		ntSH
185	HL_5DDP_001	5DDP	0.1402	0	GNRA	A	glnA	G	11	G	12	A	13	A	14	A	15	C	16	cWW		ntSH
186	HL_8X5V_001	8X5V	0.1027	0	GNRA	B	RNA (110-mer)	U	33	G	34	A	35	A	36	A	37	A	38	cWW		ntSH
187	HL_5J7L_010	5J7L	0.1405	0	GNRA	AA	SSU rRNA	C	379	G	380	C	381	A	382	A	383	G	384	cWW		ntSH
188	HL_4LFB_010	4LFB	0.1579	0	GNRA	A	SSU rRNA	C	379	G	380	C	381	A	382	A	383	G	384	cWW		ntSH
189	HL_8P9A_185	8P9A	0.1346	0	GNRA	AS	5S rRNA	G	88	G	89	U	90	G	91	A	92	C	93	cWW		ntSH
190	HL_8OI5_070	8OI5	0.1525	0	GNRA (H)	3	5S rRNA	G	88	G	89	A	90	G	91	A	92	C	93	cWW		ntSH
191	HL_7U4A_003	7U4A	0.1629	0	GNRA	A	RNA (70-MER)	C	62	G	63	A	64	A	65	A	66	G	67	cWW		ntSH
192	HL_3E5C_001	3E5C	0.1440	0	GNRA	A	SMK box (SAM-III) Riboswitch	G	18	G	19	A	20	A	21	A	22	C	23	cWW		tSH
193	HL_4Y1M_002	4Y1M	0.1261	0	GNRA	B	E. coli yybP-ykoY riboswitch	C	24	G	25	A	26	A	27	A	28	G	29	cWW		ntSH
194	HL_3AM1_003	3AM1	0.1488	0	GNRA	B	ASL-truncated tRNA	C	45	G	46	A	47	G	48	A	49	G	50	cWW		ntSH
195	HL_4V9F_072	4V9F	0.1769	0	GNRA	9	5S rRNA	C	89	G	90	C	91	G	92	A	93	G	94	cWW		ntSH
196	HL_4R4V_004	4R4V	0.1170	0	GNRA	A	VS ribozyme RNA	C	735	G	736	U	737	A	738	A	739	G	740	cWW		ntSH
197	HL_9DFE_044	9DFE	0.1334	0	GNRA	1A	LSU rRNA	C	1806	G	1807	U	1808	A	1809	A	1810	G	1811	cWW		ntSH
198	HL_4V9F_020	4V9F	0.1338	0	GNRA	0	LSU rRNA	G	690	G	691	A	692	A	693	A	694	C	695	cWW		ntSH
199	HL_5J7L_004	5J7L	0.1418	0	GNRA	AA	SSU rRNA	C	186	G	187	C	188	A	189	A	190	G	191	cWW		ntSH
200	HL_3NMU_002	3NMU	0.1255	0	GNRA	E	RNA (34-MER)	C	18	G	19	A	20	A	21	A	22	G	23	cWW		ntSH
201	HL_5TPY_004	5TPY	0.1325	0	GNRA	A	RNA (71-MER)	C	13	G	14	A	15	A	16	A	17	G	18	cWW		ntSH
202	HL_3IWN_001	3IWN	0.1446	0	GNRA	A	C-di-GMP riboswitch	C	21	G	22	A	23	A	24	A	25	G	26	cWW		ntSH
203	HL_7K16_001	7K16	0.1121	0	GNRA	P	RNA (51-MER)	C	13	G	14	A	15	A	16	A	17	G	18	cWW		ntSH
204	HL_4ENC_002	4ENC	0.1037	0	GNRA	A	Fluoride riboswitch	U	28	G	29	A	30	A	31	A	32	A	33	cWW		ntSH
205	HL_4AOB_003	4AOB	0.0817	0	GNRA	A	SAM-I riboswitch	G	73	G	74	A	75	A	76	A	77	C	78	cWW		ntSH
206	HL_3MXH_001	3MXH	0.0925	0	GNRA	R	c-di-GMP riboswitch	C	31	G	32	A	33	A	34	A	35	G	36	cWW		ntSH
207	HL_5TPY_006	5TPY	0.0723	0	GNRA	A	RNA (71-MER)	C	62	G	63	A	64	A	65	A	66	G	67	cWW		ntSH
208	HL_7D7W_001	7D7W	0.0900	0	GNRA	A	18GAAA (52-MER)	C	27	G	28	A	29	A	30	A	31	G	32	cWW		ntSH
209	HL_7OZQ_004	7OZQ	0.0923	0	GNRA	H	RNA	C	14	G	15	A	16	A	17	A	18	G	19	cWW		ntSH
210	HL_5FJC_003	5FJC	0.0966	0	GNRA	A	SAM-I riboswitch	G	73	G	74	A	75	A	76	A	77	C	78	cWW		ntSH
211	HL_3IGI_006	3IGI	0.0905	0	GNRA	A	Group IIC intron	G	274	G	275	A	276	A	277	A	278	C	279	cWW		ntSH
212	HL_6DVK_001	6DVK	0.0896	0	GNRA	H	RNA (95-MER)	G	45	G	46	A	47	A	48	A	49	C	50	cWW		ntSH
213	HL_8P9A_131	8P9A	0.1159	0	GNRA	AR	LSU rRNA	G	844	G	845	A	846	A	847	A	848	C	849	cWW		ntSH
214	HL_3PDR_001	3PDR	0.1351	0	GNRA	X	M-box riboswitch (ykoK leader)	C	68	C	69	A	70	A	71	A	72	G	73	cWW		ntSH
215	HL_4LCK_004	4LCK	0.1015	0	GNRA	B	tRNA	C	71	G	72	A	73	A	74	A	75	G	76	cWW		ntSH
216	HL_2OIU_001	2OIU	0.0996	0	GNRA	P	L1 Ribozyme RNA Ligase	C	10	G	11	A	12	A	13	A	14	G	15	cWW		ntSH
217	HL_5VW1_001	5VW1	0.1076	0	GNRA	C	tracrRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW
218	HL_8P9A_129	8P9A	0.1499	0	GNRA	AR	LSU rRNA	C	732	G	733	C	734	A	735	A	736	G	737	cWW		ntSH
219	HL_1L9A_002	1L9A	0.1386	0	GNRA	B	signal recognition particle RNA S domain	G	197	G	198	A	199	A	200	A	201	C	202	cWW		ntSH
220	HL_8P9A_176	8P9A	0.1555	0	GNRA	AR	LSU rRNA	C	3025	G	3026	A	3027	G	3028	A	3029	G	3030	cWW		ntSH
221	HL_8CRE_064	8CRE	0.1309	0	GNRA (H)	1	LSU rRNA	C	2997	G	2998	A	2999	G	3000	A	3001	G	3002	cWW		tSH
222	HL_4V9F_066	4V9F	0.1347	0	GNRA	0	LSU rRNA	C	2695	G	2696	A	2697	G	2698	A	2699	G	2700	cWW		ntSH
223	HL_7R97_001	7R97	0.1426	0	GNRA	C	RNA (28-MER)	C	11	G	12	C	13	A	14	A	15	G	16	cWW		tSH
224	HL_7A0S_063	7A0S	0.1362	0	GNRA	X	LSU rRNA	C	2637	G	2638	A	2639	G	2640	A	2641	G	2642	cWW		tSH
225	HL_4Y1M_003	4Y1M	0.1091	0	GNRA	B	E. coli yybP-ykoY riboswitch	U	55	G	56	A	57	A	58	A	59	A	60	cWW		ntSH
226	HL_4V9F_009	4V9F	0.1240	0	GNRA	0	LSU rRNA	C	252	U	253	C	254	A	255	C	256	G	257	cWW		ntSH
227	HL_5X2G_001	5X2G	0.0897	0	GNRA	B	Hammerhead ribozyme (type III)	U	32	G	33	A	34	A	35	A	36	A	37	cWW		ntSH
228	HL_5B2P_001	5B2P	0.1003	0	GNRA	B	Guide RNA	C	35	G	36	A	37	A	38	A	39	G	40	cWW		tSH
229	HL_1RLG_002	1RLG	0.0825	0	GNRA	D	25-MER	C	9	G	10	A	11	A	12	A	13	G	14	cWW		ntSH
230	HL_4V9F_054	4V9F	0.0929	0	GNRA	0	LSU rRNA	C	2248	G	2249	G	2250	G	2251	A	2252	G	2253	cWW		ntSH
231	HL_6N2V_002	6N2V	0.0929	0	GNRA	A	X. oryzae Mn riboswitch optimized construct	C	56	G	57	A	58	A	59	A	60	G	61	cWW		ntSH
232	HL_5FJC_002	5FJC	0.1053	0	GNRA	A	SAM-I riboswitch	A	49	G	50	A	51	A	52	A	53	U	54	cWW		ntSH
233	HL_9DXL_001	9DXL	0.1057	0	GNRA	A	RhoBAST aptamer	G	7	G	8	A	9	A	10	A	11	C	12	cWW		ntSH
234	HL_4OQU_003	4OQU	0.1064	0	GNRA	A	SAM-I/IV riboswitch	G	57	G	58	A	59	G	60	A	61	C	62	cWW		ntSH
235	HL_8ITS_001	8ITS	0.1136	0	GNRA	A	RNA (46-MER)	C	15	G	16	A	17	A	18	A	19	G	20	cWW		ntSH
236	HL_9DID_002	9DID	0.0948	0		B	frameshifting pseudoknot RNA	C	61	G	62	A	63	A	64	A	65	G	66	cWW		ntSH
237	HL_6TFF_001	6TFF	0.0775	0	GNRA	A	nadA RNA	C	27	G	28	A	29	A	30	A	31	G	32	cWW		ntSH
238	HL_8JOZ_003	8JOZ	0.0614	0	GNRA	B	tRNA	C	47\|\|\|B	G	47\|\|\|C	A	47\|\|\|D	A	47\|\|\|E	A	47\|\|\|F	G	47\|\|\|G	cWW		ntSH
239	HL_8ITS_002	8ITS	0.0733	0	GNRA	A	RNA (46-MER)	C	31	G	32	A	33	A	34	A	35	G	36	cWW		ntSH
240	HL_9L6X_002	9L6X	0.0888	0		D	CS1 RNA	C	16	G	17	A	18	A	19	A	20	G	21	cWW		ntSH
241	HL_5J7L_197	5J7L	0.1125	0	GNRA	DA	LSU rRNA	C	2658	G	2659	A	2660	G	2661	A	2662	G	2663	cWW		ntSH
242	HL_9DFE_062	9DFE	0.1144	0	GNRA	1A	LSU rRNA	C	2658	G	2659	A	2660	G	2661	A	2662	G	2663	cWW		tSH
243	HL_1G1X_001	1G1X	0.0729	0	GNRA	D	16S RIBOSOMAL RNA	C	590	G	591	A	592	A	593	A	594	G	649	cWW		ntSH
244	HL_8P9A_123	8P9A	0.0759	0	GNRA	AR	LSU rRNA	U	382	G	383	A	384	A	385	A	386	A	387	cWW		ntSH
245	HL_4RUM_002	4RUM	0.1039	0	GNRA	A	NiCo riboswitch RNA	C	51	G	52	A	53	A	54	A	55	G	56	cWW		ntSH
246	HL_3MOJ_001	3MOJ	0.1032	0	GNRA	A	LSU rRNA	G	2529	G	2530	A	2531	A	2532	A	2533	C	2534	cWW		ntSH
247	HL_3RW6_001	3RW6	0.1000	0	GNRA	H	constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA	G	27	G	28	A	29	A	30	A	31	C	32	cWW		tSH
248	HL_8D28_002	8D28	0.0725	0	GNRA	B	RNA (33-MER)	C	13	G	14	A	15	A	16	A	17	G	18	cWW		ntSH
249	HL_8Z8U_001	8Z8U	0.1032	0		A	RNA (41-MER)	C	19	G	20	A	21	A	22	A	23	G	24	cWW		ntSH
250	HL_5B2T_003	5B2T	0.1165	0	GNRA	A	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW		ntSH
251	HL_7ZO1_003	7ZO1	0.1135	0	GNRA	A	CD34 sgRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW		ntSH
252	HL_1MZP_001	1MZP	0.1284	0	GNRA	B	fragment of 23S rRNA	C	25	G	26	C	27	A	28	A	29	G	30	cWW		ntSH
253	HL_3NDB_002	3NDB	0.1531	0	GNRA	M	SRP RNA	C	208	G	209	G	210	A	211	A	212	G	213	cWW		tSH
254	HL_7QQX_003	7QQX	0.1449	0	GNRA	A	FANCF sgRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW		ntSH
255	HL_3KTW_002	3KTW	0.1531	0	GNRA	C	SRP RNA	C	209	G	210	G	211	A	212	A	213	G	214	cWW		ntSH
256	HL_5F9R_003	5F9R	0.1549	0	GNRA	A	tracrRNA	U	90	G	91	A	92	A	93	A	94	A	95	cWW		ntSH
257	HL_2IL9_003	2IL9	0.1470	0	GNRA	A	Ribosomal Binding Domain of the IRES RNA	C	6119	G	6119\|\|\|A	A	6119\|\|\|B	A	6119\|\|\|C	A	6119\|\|\|D	G	6119\|\|\|E	ncWW		tSH
258	HL_3CUL_001	3CUL	0.1480	0	GNRA	C	RNA (92-MER)	C	7	G	8	A	9	A	10	A	11	G	12	cWW		ntSH
259	HL_5DCV_002	5DCV	0.1193	0	GNRA	D	RNA (47-MER)	G	26	G	27	A	28	A	29	A	30	C	31	cWW		ntSH
260	HL_5Y7M_002	5Y7M	0.0998	0	GNRA	D	RNA (52-MER)	C	24	G	25	A	26	A	27	A	28	G	29	cWW		ntSH
261	HL_7UZ0_002	7UZ0	0.1184	0	GNRA	A	tRNA	C	36	G	37	A	38	A	39	A	40	G	41	cWW		ntSH
262	HL_5XTM_001	5XTM	0.1299	0	GNRA	B	RNA (47-MER)	G	24	G	25	A	26	A	27	A	28	C	29	cWW		ntSH
263	HL_5XTM_002	5XTM	0.1281	0	GNRA	D	RNA (47-MER)	G	24	G	25	A	26	A	27	A	28	C	29	cWW		ntSH
264	HL_4LFB_027	4LFB	0.0995	0	GNRA	A	SSU rRNA	C	1165	G	1166	A	1167	A	1168	A	1169	G	1171	cWW		ntSH
265	HL_1HMH_001	1HMH	0.0903	0	GNRA	A	HAMMERHEAD RIBOZYME-RNA STRAND	C	104	G	21\|\|\|L	A	22\|\|\|L	A	23\|\|\|L	A	24\|\|\|L	G	114	cWW		ntSH
266	HL_2R8S_001	2R8S	0.0797	0	GNRA	R	P4-P6 RNA RIBOZYME DOMAIN	G	149	G	150	A	151	A	152	A	153	C	154	cWW		ntSH
267	HL_5D5L_001	5D5L	0.0733	0	GNRA	A	PreQ1-II riboswitch	C	8	G	9	A	10	A	11	A	12	G	13	cWW		ntSH
268	HL_5UZ6_001	5UZ6	0.0000	0	GNRA	A	RNA (25-MER)	C	15	G	16	A	17	A	18	A	19	G	20	cWW		ntSH
269	HL_8HZE_002	8HZE	0.0544	0	GNRA	B	RNA (36-MER)	C	19	G	20	A	21	A	22	A	23	G	24	cWW		ntSH
270	HL_5VCI_001	5VCI	0.0762	0	GNRA	A	RNA (22-mer)	C	16	G	17	A	18	A	19	A	20	G	21	cWW		ntSH
271	HL_4JF2_001	4JF2	0.0747	0	GNRA	A	PreQ1-II Riboswitch	C	8	G	9	A	10	A	11	A	12	G	13	cWW		ntSH
272	HL_4PLX_001	4PLX	0.0841	0	GNRA	A	Core ENE hairpin and A-rich tract from MALAT1	C	24	G	25	A	26	A	27	A	28	G	29	cWW		ntSH
273	HL_7WIE_001	7WIE	0.0994	0	GNRA	V	RNA (50-MER)	C	31	G	32	A	33	A	34	A	35	G	37	cWW		ntSH
274	HL_1KH6_002	1KH6	0.0917	0	GNRA	A	JIIIabc	C	28	G	29	A	30	A	31	A	32	G	33	cWW		ntSH
275	HL_1U6B_001	1U6B	0.0954	0	GNRA	B	197-MER	G	23	G	24	A	25	A	26	A	27	C	28	cWW		ntSH
276	HL_7QQP_003	7QQP	0.1477	0	GNRA	A	AAVS1 sgRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW		ntSH
277	HL_9FN3_004	9FN3	0.1495	0		B	SAMURI-ProSeDMA	C	42	G	43	A	44	A	45	A	46	G	47	cWW		ntSH
278	HL_4BW0_001	4BW0	0.1356	0	GNRA	A	HMKT-7	C	9	G	10	A	11	A	12	A	13	G	14	cWW		ntSH
279	HL_9FN3_002	9FN3	0.1210	0		A	SAMURI-ProSeDMA	C	42	G	43	A	44	A	45	A	46	G	47	cWW		ntSH
280	HL_6JQ5_004	6JQ5	0.1178	0	GNRA	B	RNA (82-MER)	C	45	G	46	A	47	A	48	A	49	G	50	cWW		ntSH
281	HL_4FRG_002	4FRG	0.1145	0	GNRA	B	cobalamin riboswitch aptamer domain	C	46	G	47	A	48	A	49	A	50	G	51	cWW		ntSH
282	HL_8SYK_004	8SYK	0.1486	0		A	RNA device 43 truncation mutant 3 (U100C)	C	79	G	80	A	81	A	82	A	83	G	84	cWW		ntSH
283	HL_4K50_001	4K50	0.0956	0	GNRA	B	RNA (33-MER)	U	587	G	588	A	589	A	590	A	591	G	592	cWW		ntSH
284	HL_1KXK_001	1KXK	0.1203	0	GNRA	A	ai5g group II Self-splicing intron	U	33	G	34	A	35	A	36	A	37	G	38	cWW		ntSH
285	HL_4K27_001	4K27	0.1113	0	GNRA	U	Myotonic Dystrophy Type 2 RNA	U	26	G	27	A	28	A	29	A	30	G	31	cWW		ntSH
286	HL_5BTM_001	5BTM	0.1385	0	GNRA	A	RNA (55-mer)	U	26	G	27	A	28	A	29	A	30	G	31	cWW		ntSH
287	HL_4PCJ_001	4PCJ	0.1320	0	GNRA	A	trCUG-3('5)	U	16	G	17	A	18	A	19	A	20	G	21	cWW		ntSH
288	HL_6WPI_001	6WPI	0.1361	0	GNRA	B	RNA (47-MER)	U	25	G	26	A	27	A	28	A	29	G	30	cWW		ntSH
289	HL_5M0H_001	5M0H	0.1335	0	GNRA	A	ASH1 E3 (42 nt-TL/TLR)	U	21	G	22	A	23	A	24	A	25	G	26	cWW		ntSH
290	HL_1NBS_007	1NBS	0.1614	0	GNRA	B	RNase P class B	A	204	G	205	A	206	A	207	A	208	U	209	cWW		ntSH
291	HL_3V7E_003	3V7E	0.1402	0	GNRA	C	SAM-I riboswitch	G	105	G	106	A	107	A	108	A	109	C	110	cWW		ntSH
292	HL_5DDO_001	5DDO	0.1724	0	GNRA	A	L-glutamine riboswitch (58-MER)	G	11	G	12	A	13	A	14	A	15	C	16	cWW
293	HL_6UFH_005	6UFH	0.1611	0	GNRA	A	RNA (167-MER)	C	145	G	146	A	147	A	148	A	149	G	150	cWW		ntSH
294	HL_9DID_001	9DID	0.1052	0		A	frameshifting pseudoknot RNA	C	61	G	62	A	63	A	64	A	65	G	66	cWW		ntSH
295	HL_4W90_003	4W90	0.1595	0	GNRA	C	cyclic di-AMP riboswitch	C	82	G	83	A	84	A	85	A	86	G	87	cWW		ntSH
296	HL_9DFE_015	9DFE	0.1490	0	GNRA	1A	LSU rRNA	C	487	G	488	G	489	G	491	A	492	G	493	cWW		ntSH
297	HL_7A0S_016	7A0S	0.1915	0	GNRA	X	LSU rRNA	C	498	G	499	G	500	G	501	A	502	G	503	cWW		ntSH
298	HL_4WF9_016	4WF9	0.1862	0	GNRA	X	LSU rRNA	C	533	G	534	G	535	A	536	A	537	G	538	cWW		ntSH
299	HL_8Z8U_002	8Z8U	0.1795	0		B	RNA (41-MER)	C	19	G	20	A	21	A	22	A	23	G	24	cWW		ntSH
300	HL_3P22_001	3P22	0.1788	0	GNRA	A	Core ENE hairpin from KSHV PAN RNA	C	17	G	18	A	19	A	20	A	21	G	22	cWW		ntSH
301	HL_5J7L_148	5J7L	0.2175	1	GNRA	DA	LSU rRNA	C	487	G	488	G	489	G	491	A	492	G	493	cWW		tSH
302	HL_5J7L_019	5J7L	0.1790	0	GNRA	AA	SSU rRNA	C	862	U	863	A	864	A	865	C	866	G	867	cWW		ntSH
303	HL_4LFB_019	4LFB	0.1580	0	GNRA	A	SSU rRNA	C	862	U	863	A	864	A	865	C	866	G	867	cWW		ntSH
304	HL_3D0U_004	3D0U	0.1596	0	GNRA	A	Lysine Riboswitch RNA	C	142	G	143	A	144	A	145	A	146	G	147	cWW		ntSH
305	HL_1U9S_002	1U9S	0.1517	0	GNRA	A	RIBONUCLEASE P	G	99	G	100	U	101	A	102	A	103	C	104	cWW		ntSH
306	HL_7UQ6_002	7UQ6	0.1445	0	GNRA	B	tRNA	G	41	G	42	A	43	A	44	A	45	C	46	cWW		ntSH
307	HL_5FQ5_001	5FQ5	0.1939	0	GNRA	A	SGRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW
308	HL_4LFB_022	4LFB	0.2474	0	GNRA	A	SSU rRNA	U	1012	G	1013	A	1014	A	1015	A	1016	G	1017	cWW		ntSH
309	HL_8P9A_158	8P9A	0.2093	1	GNRA	AR	LSU rRNA	A	2164	G	2165	A	2166	A	2167	A	2168	U	2170	cWW		ntSH
310	HL_8CRE_045	8CRE	0.2031	1	GNRA (H)	1	LSU rRNA	A	2142	G	2143	A	2144	A	2145	A	2146	U	2148	cWW		tSH
311	HL_4LFB_007	4LFB	0.1890	0	GNRA	A	SSU rRNA	U	296	G	297	A	298	G	299	A	300	G	301	cWW		ntSH
312	HL_5J7L_007	5J7L	0.1595	0	GNRA	AA	SSU rRNA	U	296	G	297	A	298	G	299	A	300	G	301	cWW		ntSH
313	HL_3RG5_007	3RG5	0.1713	0	GNRA	B	Selenocysteine transfer RNA	U	47\|\|\|C	U	47\|\|\|D	A	47\|\|\|E	G	47\|\|\|F	C	47\|\|\|G	G	47\|\|\|H	cWW		ntSHa
314	HL_9DFE_025	9DFE	0.1995	2	GNRA	1A	LSU rRNA	C	955	G	956	A	957	A	959	A	960	G	962	cWW		ntSH
315	HL_4WF9_027	4WF9	0.2493	2	GNRA	X	LSU rRNA	U	999	G	1000	A	1001	A	1003	A	1004	G	1006	cWW		ntSH
316	HL_7A0S_026	7A0S	0.1942	2	GNRA	X	LSU rRNA	A	966	G	967	C	968	A	970	A	971	U	973	cWW		ntSH
317	HL_4V9F_028	4V9F	0.1736	1	GNRA	0	LSU rRNA	G	1054	G	1055	U	1056	A	1057	A	1058	C	1060	cWW		ntSH
318	HL_8P9A_137	8P9A	0.2053	1	GNRA	AR	LSU rRNA	G	1126	G	1127	U	1128	A	1129	A	1130	C	1132	cWW		ntSH
319	HL_8CRE_024	8CRE	0.2067	1	GNRA (H)	1	LSU rRNA	G	1122	G	1123	U	1124	A	1125	A	1126	C	1128	cWW		ntSH
320	HL_4V9F_045	4V9F	0.2279	1	GNRA	0	LSU rRNA	C	1793	G	1794	G	1795	A	1796	A	1797	G	1799	cWW
321	HL_7KKV_003	7KKV	0.2549	1	GNRA	B	OLE* RNA	G	528	G	529	A	530	A	531	A	532	C	534	cWW
322	HL_6UFG_005	6UFG	0.2819	0	GNRA	A	RNA (166-MER)	C	144	G	145	A	146	A	147	A	148	G	149	cWW
323	HL_6JDV_001	6JDV	0.2479	0	GNRA	B	sgRNA	G	48	G	49	A	50	A	51	A	52	C	53	cWW
324	HL_4QLM_001	4QLM	0.2926	0	GNRA	A	cyclic di-AMP riboswitch	C	54	G	55	A	56	A	57	A	58	G	59	cWW		ntSH
325	HL_7A0S_005	7A0S	0.3026	0	GNRA	X	LSU rRNA	C	146	G	147	C	148	A	149	A	150	G	151	cWW		ntSH
326	HL_4KQY_002	4KQY	0.3308	0	GNRA	A	SAM-I riboswitch	C	60	G	61	A	62	A	63	A	64	G	65	ncWW		ntSH
327	HL_5J7L_211	5J7L	0.3829	2	GNRA	DA	LSU rRNA	PSU	955	G	956	C	957	A	959	A	960	G	962	cWW		ntSH
328	HL_1G1X_004	1G1X	0.3337	0	GNRA	I	16S RIBOSOMAL RNA	C	590	G	591	A	592	A	593	A	594	G	649	cWW
329	HL_5LM7_001	5LM7	0.2945	1	GNRA	G	RNA (29-MER)	U	21	G	22	A	23	A	24	A	26	A	27	cWW		ntSH
330	HL_3D0U_003	3D0U	0.3304	1	GNRA	A	Lysine Riboswitch RNA	G	121	G	122	A	123	A	124	A	126	C	127	cWW		tSH
331	HL_4AL5_001	4AL5	0.2789	1	GNRA	B	RNA (20-mer)	C	10	G	11	U	12	A	13	A	15	G	16	cWW		tSH
332	HL_2XLK_001	2XLK	0.2736	1	GNRA	C	RNA (16-mer)	C	10	G	11	U	12	A	13	A	15	G	16	cWW		tSH
333	HL_7WKP_001	7WKP	0.3210	1	GNRA	B	3' stem loop crRNA	C	10	G	11	C	12	A	13	A	15	G	16	cWW		tSH
334	HL_5J7L_174	5J7L	0.3501	1	GNRA	DA	LSU rRNA	A	1630	G	1631	A	1632	G	1633	A	1635	U	1636	cWW		tSH
335	HL_5O6U_001	5O6U	0.2997	1		A	crRNA	C	32	G	33	C	34	A	35	A	37	G	38	cWW		ntSH
336	HL_1XJR_001	1XJR	0.3993	1	GNRA	A	s2m RNA	G	21	G	22	A	23	G	24	A	26	C	27	cWW		tSH
337	HL_6VMY_001	6VMY	0.3969	1	GNRA	A	Cobalamin riboswitch	U	223	G	224	A	225	A	226	A	228	A	229	cWW		ntSH
338	HL_9DFE_019	9DFE	0.4306	1	GNRA	1A	LSU rRNA	C	641	G	642	A	643	A	644	A	646	G	647	cWW		tSH
339	HL_4WF9_021	4WF9	0.4753	1	GNRA	X	LSU rRNA	U	686	G	687	A	688	A	689	A	691	G	692	cWW		ntSH
340	HL_4V9F_016	4V9F	0.4412	1	GNRA	0	LSU rRNA	U	493	C	494	A	495	G	496	A	498	G	499	cWW		ntSH
341	HL_8P9A_153	8P9A	0.5465	1	GNRA	AR	LSU rRNA	U	1862	G	1863	A	1864	A	1865	A	1867	G	1868	cWW		tSH
342	HL_8CRE_041	8CRE	0.5121	1	GNRA (H)	1	LSU rRNA	U	1858	U	1859	A	1860	A	1861	A	1863	G	1864	cWW		ntSH
343	HL_4V9F_036	4V9F	0.4432	1	GNRA	0	LSU rRNA	G	1468	C	1469	A	1470	A	1471	C	1472	C	1474	cWW		tSHa
344	HL_4LFB_012	4LFB	0.4123	1	GNRA	A	SSU rRNA	C	458	G	459	A	460	G	462	A	463	G	474	cWW		tSH
345	HL_9DFE_041	9DFE	0.4981	1	GNRA	1A	LSU rRNA	U	1720	G	1721	A	1722	G	1740	A	1741	G	1742	ncWW
346	HL_7QR8_001	7QR8	0.5489	0	GNRA	A	PTPRC sgRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW
347	HL_8CRE_193	8CRE	0.5145	1	GNRA related (H)	CM	SSU rRNA	G	152	U	153	A	154	A	155	U	156	C	158	cWW
348	HL_8P9A_192	8P9A	0.5726	1	GNRA related	sR	SSU rRNA	G	154	U	155	A	156	A	157	U	158	C	160	cWW
349	HL_5J7L_180	5J7L	0.6086	0	GNRA variation	DA	LSU rRNA	C	1868	G	1869	C	1870	A	1871	A	1872	G	1873	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAAAG	94
GGAAAC	42
UGAAAA	17
CGAGAG	16
AGAAAU	15
CGCAAG	15
UGAAAG	14
CGUGAG	12
CGUAAG	7
CGCGAG	6
CGGAAG	5
AGUGAU	5
CGAAGG	4
GGUAAC	4
GGUGAC	4
GGGAGC	3
GGCAAC	3
GGCGAC	3
GGAGAC	3
CGGGAG	3
GGUAAGC	3
GUGAAC	2
GAAGCU	2
UGUGAA	2
UGCAAG	2
CUAACG	2
AGAAAGU	2
UGAGAG	2
CGUAUAG	2
GUAAUUC	2
GUAACGC	1
CGAAAUG	1
UGCAUA	1
UUCAAG	1
UCACCG	1
UGCAUAA	1
UUAACG	1
CGACAG	1
CGAACG	1
CGGG	1
GGC	1
UGGAGG	1
UGUGAG	1
CUUCGG	1
UAAGGG	1
CAGCC(G7M)	1
CAGCC(7MG)	1
CAAACG	1
(CFZ)GAAAG	1
CUGAAG	1
UGACGG	1
UGUAAA	1
AGCAAU	1
AGCGAU	1
CGCAGG	1
CGUAGG	1
AAAAAU	1
UGAGAA	1
CCAAAG	1
CUCACG	1
CGGCGAG	1
UUAGCG	1
CGAUAACG	1
UGAUAAGG	1
AGCUAACU	1
CGGAACG	1
GGAAAUC	1
(PSU)GCUAACG	1
UGAAGAA	1
GGAAUAC	1
CGCAUAG	1
AGAGAAU	1
CGCACAG	1
GGAGUAC	1
UGAACAA	1
CGAACAG	1
UGAAUAG	1
UCAGAAG	1
UGAACAG	1
UUAACAG	1
GCAACUC	1
CGACGAG	1
UGAUGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAAA	183
GUGA	24
GAGA	22
GCAA	21
GUAA	12
GCGA	10
GGAA	5
GGAG	4
GAAG	4
UAAC	3
UGAA	3
GGGA	3
GUAAG	3
GAACA	3
GAAAU	2
GCAUA	2
AGCC	2
AAGC	2
GAAAG	2
GCUAAC	2
GAAUA	2
GUAUA	2
UAAUU	2
UAACG	1
GCAU	1
UCAA	1
CACC	1
GACA	1
GAAC	1
GG(MA6)(MA6)	1
(2MG)G(MA6)(MA6)	1
UUCG	1
AAGG	1
AAAC	1
GACG	1
GCAG	1
GUAG	1
AAAA	1
CAAA	1
UCAC	1
GGCGA	1
UAGC	1
GAUAAC	1
GAUAAG	1
GGAAC	1
GAAGA	1
GAGAA	1
GCACA	1
GAGUA	1
CAGAA	1
UAACA	1
CAACU	1
GACGA	1
GAUGA	1

Release history

Release	3.96
Date	2025-04-23
Status	Updated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: GNRA (295)
GNRA (H) (19)
GNRA variation (14)
(13)
GNRA with GA tSW pair (3)
GNRA variation (H) (3)
GNRA related (H) (1)
GNRA related (1)
Basepair signature: cWW-F-F-F-F
Heat map statistics: Min 0.05 | Avg 0.29 | Max 0.99

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Coloring options: Nucleotide numbers

Motif HL_37824.7 Version HL_37824.7 of this group appears in releases 3.96 to 3.96 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

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Parent motifs

Children motifs

Motif HL_37824.7 Version HL_37824.7 of this group appears in releases 3.96 to 3.96

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