HL_6SKG_039

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUGGAACG

Length

8 nucleotides

Bulged bases

6SKG|1|BA|C|350

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_039 not in the Motif Atlas

Homologous match to HL_4V9F_010

Geometric discrepancy: 0.1132

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

6SKG|1|BA|C|344
6SKG|1|BA|U|345
6SKG|1|BA|G|346
6SKG|1|BA|G|347
6SKG|1|BA|A|348
6SKG|1|BA|A|349
6SKG|1|BA|C|350
6SKG|1|BA|G|351

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BX

50S ribosomal protein L24

Chain Bd

50S ribosomal protein L32e