HL_6SKG_041

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

6SKG|1|BA|G|368, 6SKG|1|BA|A|369, 6SKG|1|BA|A|370

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_041 not in the Motif Atlas

Geometric match to HL_5J7L_144

Geometric discrepancy: 0.1337

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6SKG|1|BA|G|366
6SKG|1|BA|U|367
6SKG|1|BA|G|368
6SKG|1|BA|A|369
6SKG|1|BA|A|370
6SKG|1|BA|A|371
6SKG|1|BA|G|372
6SKG|1|BA|C|373
6SKG|1|BA|C|374

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BX

50S ribosomal protein L24

Chain Bd

50S ribosomal protein L32e