HL_6SKG_042

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUCGGAUAUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_042 not in the Motif Atlas

Homologous match to HL_4V9F_013

Geometric discrepancy: 0.0967

The information below is about HL_4V9F_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91228.1

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6SKG|1|BA|G|423
6SKG|1|BA|U|424
6SKG|1|BA|C|425
6SKG|1|BA|G|426
6SKG|1|BA|G|427
6SKG|1|BA|A|428
6SKG|1|BA|U|429
6SKG|1|BA|A|430
6SKG|1|BA|U|431
6SKG|1|BA|C|432

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BO

50S ribosomal protein L15

Chain BP

50S ribosomal protein L15e

Chain Bl

50S ribosomal protein L44e