HL_6SKG_056

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GCGAAAGCC

Length

9 nucleotides

Bulged bases

6SKG|1|BA|A|1018, 6SKG|1|BA|A|1019, 6SKG|1|BA|A|1020

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_056 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3589

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6SKG|1|BA|G|1015
6SKG|1|BA|C|1016
6SKG|1|BA|G|1017
6SKG|1|BA|A|1018
6SKG|1|BA|A|1019
6SKG|1|BA|A|1020
6SKG|1|BA|G|1021
6SKG|1|BA|C|1022
6SKG|1|BA|C|1023

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Au

30S ribosomal protein S19