HL_6SKG_071

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

G(OMU)GAGAAGC

Length

9 nucleotides

Bulged bases

6SKG|1|BA|A|1780

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_071 not in the Motif Atlas

Homologous match to HL_4V9F_043

Geometric discrepancy: 0.2586

The information below is about HL_4V9F_043

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6SKG|1|BA|G|1775
6SKG|1|BA|OMU|1776
6SKG|1|BA|G|1777
6SKG|1|BA|A|1778
6SKG|1|BA|G|1779
6SKG|1|BA|A|1780
6SKG|1|BA|A|1781
6SKG|1|BA|G|1782
6SKG|1|BA|C|1783

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L19e