HL_6SKG_072

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6SKG|1|BA|U|1841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_072 not in the Motif Atlas

Geometric match to HL_5Y85_004

Geometric discrepancy: 0.1046

The information below is about HL_5Y85_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

6SKG|1|BA|C|1839
6SKG|1|BA|U|1840
6SKG|1|BA|U|1841
6SKG|1|BA|C|1842
6SKG|1|BA|G|1843
6SKG|1|BA|G|1844

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain Bg

50S ribosomal protein L37Ae

Chain Bk

LSU ribosomal protein L41E