HL_6SKG_075

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UUUAGUAAAAA

Length

11 nucleotides

Bulged bases

6SKG|1|BA|A|1908, 6SKG|1|BA|G|1909, 6SKG|1|BA|U|1910, 6SKG|1|BA|A|1914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_075 not in the Motif Atlas

Homologous match to HL_4V9F_047

Geometric discrepancy: 0.1346

The information below is about HL_4V9F_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

10

Unit IDs

6SKG|1|BA|U|1905
6SKG|1|BA|U|1906
6SKG|1|BA|U|1907
6SKG|1|BA|A|1908
6SKG|1|BA|G|1909
6SKG|1|BA|U|1910
6SKG|1|BA|A|1911
6SKG|1|BA|A|1912
6SKG|1|BA|A|1913
6SKG|1|BA|A|1914
6SKG|1|BA|A|1915

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain Bh

50S ribosomal protein L37e