HL_6SKG_081

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUCCGGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_081 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3594

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6SKG|1|BA|C|2255
6SKG|1|BA|U|2256
6SKG|1|BA|C|2257
6SKG|1|BA|C|2258
6SKG|1|BA|G|2259
6SKG|1|BA|G|2260
6SKG|1|BA|G|2261

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Ad

30S ribosomal protein S3Ae