HL_6SKG_087

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UAACAGA(OMG)G

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_087 not in the Motif Atlas

Geometric match to HL_5J7L_185

Geometric discrepancy: 0.3142

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

6SKG|1|BA|U|2459
6SKG|1|BA|A|2460
6SKG|1|BA|A|2461
6SKG|1|BA|C|2462
6SKG|1|BA|A|2463
6SKG|1|BA|G|2464
6SKG|1|BA|A|2465
6SKG|1|BA|OMG|2466
6SKG|1|BA|G|2467

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BO

50S ribosomal protein L15

Chain BU

50S ribosomal protein L21e