HL_6SKG_107

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

(OMU)CUUGGAUCA

Length

10 nucleotides

Bulged bases

6SKG|1|BA|C|665

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_107 not in the Motif Atlas

Homologous match to HL_4V9F_018

Geometric discrepancy: 0.2765

The information below is about HL_4V9F_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

6SKG|1|BA|OMU|657
6SKG|1|BA|C|658
6SKG|1|BA|U|659
6SKG|1|BA|U|660
6SKG|1|BA|G|661
6SKG|1|BA|G|662
6SKG|1|BA|A|663
6SKG|1|BA|U|664
6SKG|1|BA|C|665
6SKG|1|BA|A|666

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BO

50S ribosomal protein L15

Chain Bd

50S ribosomal protein L32e