HL_6SKG_108

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

(OMG)CG(5MU)GCA(A2M)UU

Length

10 nucleotides

Bulged bases

6SKG|1|BA|5MU|875, 6SKG|1|BA|A2M|879, 6SKG|1|BA|U|880

QA status

Modified nucleotides: OMG, 5MU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_108 not in the Motif Atlas

Homologous match to HL_4V9F_024

Geometric discrepancy: 0.1304

The information below is about HL_4V9F_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6SKG|1|BA|OMG|872
6SKG|1|BA|C|873
6SKG|1|BA|G|874
6SKG|1|BA|5MU|875
6SKG|1|BA|G|876
6SKG|1|BA|C|877
6SKG|1|BA|A|878
6SKG|1|BA|A2M|879
6SKG|1|BA|U|880
6SKG|1|BA|U|881

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BV

50S ribosomal protein L22

Chain Bh

50S ribosomal protein L37e