HL_6SKG_109

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

(OMU)GAGAAG

Length

7 nucleotides

Bulged bases

6SKG|1|BA|A|1780

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_109 not in the Motif Atlas

Geometric match to HL_5TBW_042

Geometric discrepancy: 0.1358

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6SKG|1|BA|OMU|1776
6SKG|1|BA|G|1777
6SKG|1|BA|A|1778
6SKG|1|BA|G|1779
6SKG|1|BA|A|1780
6SKG|1|BA|A|1781
6SKG|1|BA|G|1782

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L19e