HL_6SNT_014
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 6SNT|1|1|C|648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SNT_014 not in the Motif Atlas
- Homologous match to HL_8C3A_014
- Geometric discrepancy: 0.0804
- The information below is about HL_8C3A_014
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6SNT|1|1|U|640
6SNT|1|1|C|641
6SNT|1|1|U|642
6SNT|1|1|U|643
6SNT|1|1|G|644
6SNT|1|1|A|645
6SNT|1|1|A|646
6SNT|1|1|A|647
6SNT|1|1|C|648
6SNT|1|1|A|649
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain al
- 60S ribosomal protein L32
- Chain ap
- 60S ribosomal protein L28
- Chain i
- 60S ribosomal protein L3
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