HL_6SNT_021
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCGAAAGAC
- Length
- 9 nucleotides
- Bulged bases
- 6SNT|1|1|A|913, 6SNT|1|1|G|916
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SNT_021 not in the Motif Atlas
- Homologous match to HL_5TBW_021
- Geometric discrepancy: 0.082
- The information below is about HL_5TBW_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56443.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6SNT|1|1|G|910
6SNT|1|1|C|911
6SNT|1|1|G|912
6SNT|1|1|A|913
6SNT|1|1|A|914
6SNT|1|1|A|915
6SNT|1|1|G|916
6SNT|1|1|A|917
6SNT|1|1|C|918
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain ag
- 60S ribosomal protein L37-A
- Chain h
- 60S ribosomal protein L2-A
- Chain t
- 60S ribosomal protein L15-A
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