HL_6SNT_022

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6SNT|1|1|C|959, 6SNT|1|1|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SNT_022 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.1076

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6SNT|1|1|C|958
6SNT|1|1|C|959
6SNT|1|1|U|960
6SNT|1|1|C|961
6SNT|1|1|A|962
6SNT|1|1|G|963

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain ab

60S ribosomal protein L42-A

Chain ao

60S ribosomal protein L29

Chain ap

60S ribosomal protein L28