HL_6SNT_023
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UCGAAAUGA
- Length
- 9 nucleotides
- Bulged bases
- 6SNT|1|1|U|1028
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SNT_023 not in the Motif Atlas
- Geometric match to HL_4WF9_041
- Geometric discrepancy: 0.3899
- The information below is about HL_4WF9_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_65167.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
6SNT|1|1|U|1022
6SNT|1|1|C|1023
6SNT|1|1|G|1024
6SNT|1|1|A|1025
6SNT|1|1|A|1026
6SNT|1|1|A|1027
6SNT|1|1|U|1028
6SNT|1|1|G|1029
6SNT|1|1|A|1030
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain P
- 40S ribosomal protein S15
- Chain S
- 40S ribosomal protein S18-A
- Chain q
- 60S ribosomal protein L11-A
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