HL_6SNT_029
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 6SNT|1|1|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SNT_029 not in the Motif Atlas
- Homologous match to HL_5TBW_029
- Geometric discrepancy: 0.3354
- The information below is about HL_5TBW_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01763.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6SNT|1|1|U|1347
6SNT|1|1|U|1348
6SNT|1|1|G|1349
6SNT|1|1|A|1350
6SNT|1|1|U|1351
6SNT|1|1|A|1352
6SNT|1|1|U|1353
6SNT|1|1|G|1354
6SNT|1|1|A|1355
6SNT|1|1|U|1356
6SNT|1|1|G|1357
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain al
- 60S ribosomal protein L32
- Chain j
- 60S ribosomal protein L4-A
- Chain l
- 60S ribosomal protein L6-B
- Chain w
- 60S ribosomal protein L18-A
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