HL_6SNT_039

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

6SNT|1|1|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SNT_039 not in the Motif Atlas

Homologous match to HL_8P9A_150

Geometric discrepancy: 0.3883

The information below is about HL_8P9A_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68791.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6SNT|1|1|C|1759
6SNT|1|1|A|1760
6SNT|1|1|C|1761
6SNT|1|1|C|1762
6SNT|1|1|U|1763
6SNT|1|1|U|1764
6SNT|1|1|U|1765
6SNT|1|1|G|1766

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain au

60S ribosomal protein L22-A

Chain x

60S ribosomal protein L19-A