HL_6SNT_056

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

6SNT|1|1|A|2637, 6SNT|1|1|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SNT_056 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.0763

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6SNT|1|1|U|2633
6SNT|1|1|U|2634
6SNT|1|1|A|2635
6SNT|1|1|A|2636
6SNT|1|1|A|2637
6SNT|1|1|C|2638
6SNT|1|1|G|2639
6SNT|1|1|A|2640
6SNT|1|1|U|2641
6SNT|1|1|A|2642
6SNT|1|1|A|2643
6SNT|1|1|C|2644
6SNT|1|1|G|2645

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain ao

60S ribosomal protein L29

Chain p

60S ribosomal protein L10

Chain z

60S ribosomal protein L21-A