HL_6SNT_081
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UAAGGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SNT_081 not in the Motif Atlas
- Homologous match to HL_4V88_194
- Geometric discrepancy: 0.1373
- The information below is about HL_4V88_194
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50142.3
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6SNT|1|2|U|368
6SNT|1|2|A|369
6SNT|1|2|A|370
6SNT|1|2|G|371
6SNT|1|2|G|372
6SNT|1|2|G|373
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA
Nearby chains
- Chain C
- 40S ribosomal protein S2
- Chain J
- 40S ribosomal protein S9-A
- Chain L
- 40S ribosomal protein S11-A
- Chain W
- 40S ribosomal protein S22-A
- Chain X
- 40S ribosomal protein S23-A
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