HL_6SNT_111
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CACAUUG
- Length
- 7 nucleotides
- Bulged bases
- 6SNT|1|3|A|111, 6SNT|1|3|U|113
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SNT_111 not in the Motif Atlas
- Homologous match to HL_5TBW_075
- Geometric discrepancy: 0.1402
- The information below is about HL_5TBW_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_22523.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
6SNT|1|3|C|108
6SNT|1|3|A|109
6SNT|1|3|C|110
6SNT|1|3|A|111
6SNT|1|3|U|112
6SNT|1|3|U|113
6SNT|1|3|G|114
Current chains
- Chain 3
- 5.8S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain ae
- 60S ribosomal protein L39
- Chain ag
- 60S ribosomal protein L37-A
- Chain as
- 60S ribosomal protein L25
Coloring options: