HL_6SPB_023

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

6SPB|1|A|A|771, 6SPB|1|A|G|774

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPB_023 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1519

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

6SPB|1|A|U|769
6SPB|1|A|G|770
6SPB|1|A|A|771
6SPB|1|A|A|772
6SPB|1|A|A|773
6SPB|1|A|G|774
6SPB|1|A|G|775

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2