HL_6SPB_034

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6SPB|1|A|U|1383, 6SPB|1|A|U|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPB_034 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.1623

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6SPB|1|A|G|1376
6SPB|1|A|U|1377
6SPB|1|A|U|1378
6SPB|1|A|A|1379
6SPB|1|A|A|1380
6SPB|1|A|U|1381
6SPB|1|A|A|1382
6SPB|1|A|U|1383
6SPB|1|A|U|1384
6SPB|1|A|C|1385

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23