HL_6SPB_053

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6SPB|1|A|A|2255, 6SPB|1|A|C|2262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPB_053 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1454

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6SPB|1|A|C|2251
6SPB|1|A|U|2252
6SPB|1|A|A|2253
6SPB|1|A|A|2254
6SPB|1|A|A|2255
6SPB|1|A|G|2256
6SPB|1|A|A|2257
6SPB|1|A|G|2258
6SPB|1|A|U|2259
6SPB|1|A|A|2260
6SPB|1|A|A|2261
6SPB|1|A|C|2262
6SPB|1|A|G|2263

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27