HL_6SPC_022

3D structure

PDB id

6SPC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

6SPC|1|a|G|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPC_022 not in the Motif Atlas

Homologous match to HL_6CZR_096

Geometric discrepancy: 0.5895

The information below is about HL_6CZR_096

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

6SPC|1|a|G|1083
6SPC|1|a|U|1084
6SPC|1|a|U|1085
6SPC|1|a|A|1086
6SPC|1|a|A|1087
6SPC|1|a|G|1088
6SPC|1|a|U|1089
6SPC|1|a|C|1090

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain g

30S ribosomal protein S7