HL_6SPC_024

3D structure

PDB id

6SPC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GUGACAAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPC_024 not in the Motif Atlas

Geometric match to HL_6NTA_138

Geometric discrepancy: 0.3868

The information below is about HL_6NTA_138

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

46

Unit IDs

6SPC|1|a|G|1158
6SPC|1|a|U|1159
6SPC|1|a|G|1160
6SPC|1|a|A|1161
6SPC|1|a|C|1162
6SPC|1|a|A|1163
6SPC|1|a|A|1164
6SPC|1|a|A|1165
6SPC|1|a|C|1166
6SPC|1|a|C|1167

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain g

30S ribosomal protein S7