HL_6SPD_001
3D structure
- PDB id
- 6SPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- UGGUAGCCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SPD_001 not in the Motif Atlas
- Homologous match to HL_7RQB_001
- Geometric discrepancy: 0.4662
- The information below is about HL_7RQB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99167.2
- Basepair signature
- cWW-F-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
6SPD|1|A|U|59
6SPD|1|A|G|60
6SPD|1|A|G|61
6SPD|1|A|U|62
6SPD|1|A|A|63
6SPD|1|A|G|64
6SPD|1|A|C|65
6SPD|1|A|C|66
6SPD|1|A|U|67
6SPD|1|A|G|68
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L34
- Chain T
- 50S ribosomal protein L23
- Chain Y
- Ribosomal protein uL29
Coloring options: