HL_6SPD_025

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

6SPD|1|A|C|879

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPD_025 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.2839

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6SPD|1|A|C|874
6SPD|1|A|A|875
6SPD|1|A|U|876
6SPD|1|A|C|877
6SPD|1|A|C|878
6SPD|1|A|C|879
6SPD|1|A|G|880

Current chains

Chain A

23S ribosomal RNA

Nearby chains