HL_6SPD_028

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

6SPD|1|A|A|1060

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPD_028 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.2962

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6SPD|1|A|C|1054
6SPD|1|A|U|1055
6SPD|1|A|U|1056
6SPD|1|A|A|1057
6SPD|1|A|G|1058
6SPD|1|A|A|1059
6SPD|1|A|A|1060
6SPD|1|A|G|1061
6SPD|1|A|C|1062
6SPD|1|A|A|1063
6SPD|1|A|G|1064

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L11