HL_6SPD_030

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

6SPD|1|A|G|1162, 6SPD|1|A|A|1164, 6SPD|1|A|A|1165

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPD_030 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3637

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6SPD|1|A|C|1161
6SPD|1|A|G|1162
6SPD|1|A|U|1163
6SPD|1|A|A|1164
6SPD|1|A|A|1165
6SPD|1|A|G|1166

Current chains

Chain A

23S ribosomal RNA

Nearby chains