HL_6SPD_048

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

6SPD|1|A|A|1900

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPD_048 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.514

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

6SPD|1|A|G|1897
6SPD|1|A|U|1898
6SPD|1|A|A|1899
6SPD|1|A|A|1900
6SPD|1|A|C|1901
6SPD|1|A|U|1902
6SPD|1|A|A|1903
6SPD|1|A|U|1904
6SPD|1|A|A|1905
6SPD|1|A|A|1906
6SPD|1|A|C|1907

Current chains

Chain A

23S ribosomal RNA

Nearby chains