HL_6SPD_049

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6SPD|1|A|U|1938, 6SPD|1|A|U|1942

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPD_049 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.1568

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6SPD|1|A|G|1936
6SPD|1|A|G|1937
6SPD|1|A|U|1938
6SPD|1|A|A|1939
6SPD|1|A|A|1940
6SPD|1|A|G|1941
6SPD|1|A|U|1942
6SPD|1|A|U|1943
6SPD|1|A|C|1944

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L14