HL_6SPD_055

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6SPD|1|A|A|2255, 6SPD|1|A|C|2262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPD_055 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1548

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6SPD|1|A|C|2251
6SPD|1|A|U|2252
6SPD|1|A|A|2253
6SPD|1|A|A|2254
6SPD|1|A|A|2255
6SPD|1|A|G|2256
6SPD|1|A|A|2257
6SPD|1|A|G|2258
6SPD|1|A|U|2259
6SPD|1|A|A|2260
6SPD|1|A|A|2261
6SPD|1|A|C|2262
6SPD|1|A|G|2263

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27