HL_6SPD_056

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGUCGGAAAUC

Length

11 nucleotides

Bulged bases

6SPD|1|A|A|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPD_056 not in the Motif Atlas

Homologous match to HL_7A0S_054

Geometric discrepancy: 0.4447

The information below is about HL_7A0S_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6SPD|1|A|G|2290
6SPD|1|A|G|2291
6SPD|1|A|U|2292
6SPD|1|A|C|2293
6SPD|1|A|G|2294
6SPD|1|A|G|2295
6SPD|1|A|A|2296
6SPD|1|A|A|2297
6SPD|1|A|A|2298
6SPD|1|A|U|2299
6SPD|1|A|C|2300

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L5