HL_6SPD_062
3D structure
- PDB id
- 6SPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- UGAAGCCG
- Length
- 8 nucleotides
- Bulged bases
- 6SPD|1|A|G|2516
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SPD_062 not in the Motif Atlas
- Homologous match to HL_4WF9_057
- Geometric discrepancy: 0.1463
- The information below is about HL_4WF9_057
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_46665.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
6SPD|1|A|U|2515
6SPD|1|A|G|2516
6SPD|1|A|A|2517
6SPD|1|A|A|2518
6SPD|1|A|G|2519
6SPD|1|A|C|2520
6SPD|1|A|C|2521
6SPD|1|A|G|2522
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L36
- Chain G
- 50S ribosomal protein L6
Coloring options: